NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold actLayA5DRAFT_109155

Scaffold actLayA5DRAFT_109155


Overview

Basic Information
Taxon OID3300000335 Open in IMG/M
Scaffold IDactLayA5DRAFT_109155 Open in IMG/M
Source Dataset NameSoil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)595
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m).3 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001233Metagenome / Metatranscriptome741Y
F023129Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
actLayA5DRAFT_1091551F001233N/ALRLNVSRIIPGDWGNVESGWLTQLLSSRIARFGSGGRIHQFLWRRSRAVSNAKRN*
actLayA5DRAFT_1091552F023129AGGVKRRDPWHRANALSKAAADPALIGGDAETKLQTCLYLVAPPA

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