Scaffold EchG_transB_7880CDRAFT

Basic Information
Taxon OID	3300000340 Open in IMG/M
Scaffold ID	EchG_transB_7880CDRAFT_1001388 Open in IMG/M
Source Dataset Name	Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

Scaffold ID

EchG_transB_7880CDRAFT_1001388 Open in IMG/M

Source Dataset Name

Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	5603
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5603

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (61.54%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Echinus Geyser, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.7220558	Long. (^o)	-110.7021057	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Echinus Geyser, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.7220558

Long. (^o)

-110.7021057

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
EchG_transB_7880CDRAFT_100138810	F081547	GGTGG	MPYLRGVFINFGEETYYLSCGIVNGGNLDTETYTVNQPSLMMVRLGRDLYIVTSELKLIIPVEPIKTLLSSETSKVYNEILSQGNEVKPA*
EchG_transB_7880CDRAFT_100138811	F076263	GGA	MLSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEATYIKFDCRDHKYTLTIVRTGVAKTMRVSSREQLYRRLFPEYSPEYSGNYTEEFWGGE*
EchG_transB_7880CDRAFT_100138812	F080247	N/A	MIVWGKTIECIIDADVNYLNGELFNSQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAVMSFYIKEKDIYANVSLTDPDTIKEFMTMSTYYRKYGVSIPNVLDKIMYRKVPT*
EchG_transB_7880CDRAFT_10013887	F075084	GAG	VRPCRKDLCLLYSLGADYAKLIDFTRENPAGRLFEVGARAMSYASGLMRLWYGYDTGALLERSLRRILRRSITYCNIMRRLGLESEYCRRFTIYNGVTCDLVSVFTVETAYADILHMIVNYNSENVSKVLTKMTEMCSTYEVR*
EchG_transB_7880CDRAFT_10013888	F080245	N/A	MIFVWSARVIIPAFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT*
EchG_transB_7880CDRAFT_10013889	F087442	GAGG	MMREGLVKAGNLVVDCKPCYVAGTGFTKDDIYVISEGTIMFKWYDKIAVIIVGEEGTKVNLLDIVDVRFLVERNENCLATRL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold EchG_transB_7880CDRAFT_1001388

Overview

Ecosystem & Geography

Associated Families

Sequences