Scaffold EchG_transB_7880CDRAFT

Basic Information
Taxon OID	3300000340 Open in IMG/M
Scaffold ID	EchG_transB_7880CDRAFT_1002572 Open in IMG/M
Source Dataset Name	Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

Scaffold ID

EchG_transB_7880CDRAFT_1002572 Open in IMG/M

Source Dataset Name

Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3539
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3539

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Echinus Geyser, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.7220558	Long. (^o)	-110.7021057	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Echinus Geyser, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.7220558

Long. (^o)

-110.7021057

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F011097	Metagenome / Metatranscriptome	295	Y
F045200	Metagenome / Metatranscriptome	153	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
EchG_transB_7880CDRAFT_10025721	F045200	N/A	PDQYKPGAPASQWLDPPVLLVSYDQISRDVVNWADNVFTAAGYTPSSPGVINVPSTYITNYGYTGYAGAPSTVTLNFTGTPELKQLHMIYDMLDDTMLMYFSITVPNWNPATKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGWLKFDSRVEQTIGNALGGNWGNTLQMQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNPVSMAAFYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIITNYGYAMPAFSGLPENLESCPSSYGSNSYYCIPILGFAGQLDTFDLGLNIDKFGSIVPGESFGIHGAYIIPITLPPRPDWGGISSIRMKMLYVAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYLDGIAIYIDKSVISPKGKTLVTVPSLIFGQTSPGGSYYVIAGANPFNSIYHGVVAHTFGKKYARVYLNINAGNAAFVNIYTRYRSRSAPDLQQMYGNSPNPNNTATYYPIVERNFGTLVYATDYSYNMPYATGYPRTSKFRVDDQVLWVLTRDGYGPVWVELEGD*
EchG_transB_7880CDRAFT_10025722	F011097	GGAGG	MIRDVPLYTSGGTDPFTGLPVGGSPITGNGGNNQFLRFHPNYARLHIYITGLSGTSPSIQFTVGSPLGSNYYTLPPITSPIYIYVIGNENKTIITYLNTNAQVLQQVELPYNIFLNGAHVSWSVAGTSPSITTYIHFEFEDEEEDEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold EchG_transB_7880CDRAFT_1002572

Overview

Ecosystem & Geography

Associated Families

Sequences