NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold EM176_1000177

Scaffold EM176_1000177


Overview

Basic Information
Taxon OID3300000356 Open in IMG/M
Scaffold IDEM176_1000177 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Cork, Ireland - EM176
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI), Macrogen
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13387
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (19.35%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Source Dataset Sampling Location
Location NameCork, Ireland
CoordinatesLat. (o)51.907Long. (o)-8.472Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089054Metagenome109N

Sequences

Protein IDFamilyRBSSequence
EM176_100017729F089054N/AMLTKGKFLVSFEVPGHTKEYTEGFTEKMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREMLQIPLRDITIIDIISLP*
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