Scaffold SL_1KL_011_SEDDRAFT_10172922

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SL_1KL_011_SEDDRAFT_10172922

Scaffold SL_1KL_011_SEDDRAFT_10172922

Overview

Basic Information
Taxon OID	3300000362 Open in IMG/M
Scaffold ID	SL_1KL_011_SEDDRAFT_10172922 Open in IMG/M
Source Dataset Name	Alkaline sediment microbial communities from Cock Soda Lake, Kulunda Steppe, Russia - 1KL_011_SED
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	707
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location
Location Name	Russia: Kulunda Steppe, Cock Lake
Coordinates	Lat. (^o)	52.06	Long. (^o)	79.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F098192	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
SL_1KL_011_SEDDRAFT_101729222	F098192	GGAGG	MKCPLRIYSEGFDLECYKDECAWWVIDAEIEGSKTKGACAILEVAVNGIFVTIGDDEEEDFE*

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