NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold INPhiseqgaiiFebDRAFT_100370765

Scaffold INPhiseqgaiiFebDRAFT_100370765


Overview

Basic Information
Taxon OID3300000364 Open in IMG/M
Scaffold IDINPhiseqgaiiFebDRAFT_100370765 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)771
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002770Metagenome / Metatranscriptome531Y
F004064Metagenome455Y

Sequences

Protein IDFamilyRBSSequence
INPhiseqgaiiFebDRAFT_1003707651F004064N/ALSTIMRGAFVIQLGPETKPAEGRFAGWVEEVDSCTEIRFRSAEELLKFLGQRFDLAKTSVDETRVRNKSEQVPPRKKTCRKERGSP*
INPhiseqgaiiFebDRAFT_1003707652F002770GAGGMTIICSLLFRAFLLLTLIASYVFLTYGKEGPSFVHIVRNEAWNDLITQIKFVPAASPEDSIDKEIVVIQRFLKAHEAEVRVDSYDLEVFKAIDRARTRLQKADRDLETLRNELSYKEEKAKLGR*
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