Basic Information | |
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Taxon OID | 3300000364 Open in IMG/M |
Scaffold ID | INPhiseqgaiiFebDRAFT_101626845 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 735 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024735 | Metagenome / Metatranscriptome | 204 | N |
F053600 | Metagenome / Metatranscriptome | 141 | N |
Protein ID | Family | RBS | Sequence |
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INPhiseqgaiiFebDRAFT_1016268451 | F053600 | GGAG | MSSLQGKSISSIGVIVGXAXIVSNLAXAQSQTXPPATIADNDSIYIDGKTFAITPGRAKGDTSAQIEALGARDLGPGAIIF |
INPhiseqgaiiFebDRAFT_1016268452 | F024735 | N/A | PSLTGGGSVGYXXQFAYDPRQYNPNLTGGGSVGYNQQFAYXPRQYNPSQTGGGSPGYNQMLMQFANDPRAPQYNPSLTGGGSPGYNATLMQFAYDPDYVQYKLKKAFEDNWIPASTK* |
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