NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold INPhiseqgaiiFebDRAFT_101803802

Scaffold INPhiseqgaiiFebDRAFT_101803802


Overview

Basic Information
Taxon OID3300000364 Open in IMG/M
Scaffold IDINPhiseqgaiiFebDRAFT_101803802 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3467
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004291Metagenome / Metatranscriptome445Y
F046497Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
INPhiseqgaiiFebDRAFT_1018038021F046497AGGAGGVRFGTAIRWVRSAPLALILSCPSIVRGQGPAPETAPPLFPGGGLISYNSIFITRGQQSGISSGIPLTAQPTLSHQANFQFTWGFYRNLDLTLLVPIVTNHFDTLGAPTVGGTGLGDATAIIKYRFYRRDSKRGTTQASFTIGPKVPSGRTNLTDRNGQKLPASLQPGSGSTDLFLAANWTYTGLFNLKRLVADEDFRYLQRFQGTQATRLGSQISSRFWLSYRPYQSKNVAREWFIGPALTWLHSQDEHIAGVVQSGSGGDTLLAGVTSFLGLRPGMHLWLGMDWAVAHSTGTSFVTVQHQISFGITQQFRLHFGGKEKK*
INPhiseqgaiiFebDRAFT_1018038022F004291AGGAGMNAKQIALLMLLGTTAMPVAQAQIKHIEMRVEGMT*
INPhiseqgaiiFebDRAFT_1018038023F000092GAGVKQHLGRQSGVQKVEVSLIDGKVDITPKEDGQIDPAQLLKATYDSGVTAEEMDVIARGRIAKDTLGGLALQVEPNRSFAIAPNQLSETLESLADTPTTVTVRGQLYKKPVGKKKIAPSSSLKLLILEVHQKE*
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