NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSpr2010DRAFT_104543

Scaffold DelMOSpr2010DRAFT_104543


Overview

Basic Information
Taxon OID3300000368 Open in IMG/M
Scaffold IDDelMOSpr2010DRAFT_104543 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Late spring/early summer
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1524
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087251Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
DelMOSpr2010DRAFT_1045431F087251N/AKALSEASTLEPRRAAELVQEFALNKADSGVSVDDKTREKLIMIRDMLTNETYTALEQSHRRDQDLLAKHARAINECGLAHSKHLQMDVEGQEVNLVRDTEDTMYACRGFPEHSEALMQQPERYWSNWTGVNDPQFSDPDFKSLRATQIDMFAKCDALDDFVRGIPLPNCVPPMDNIAMESPSCSAQPTGVDSDLNDWFTNMKENAKFYQGQWRELRDDCNAARQAYNELDRICDRKQRQFEQSFCSYRQGLHATCAEYQGCHVLNEEQYKALIKAVQYNADGRKIDWKAIHKIECYINVLISDESNTLRAEDLLNCEAGNLNTIETILTGFNETNYLSLIVPEINVSCWDIDIPQYIDFKECDMSSVSQFPCTDKWMDRYNGIESPELCGECSPIPDGFQYTMDQEHSGAKSDEYGGGWHFVNELGRENTDINDLTSLAPGGYHLPEYLTGNLRWNEVLIERVSANWCDSWGTQTGYWAETGGASMCIQSDNKDVYCMNNKAGGHSWR
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