NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PR_CR_10_Liq_1_inCRDRAFT_1001570

Scaffold PR_CR_10_Liq_1_inCRDRAFT_1001570


Overview

Basic Information
Taxon OID3300000385 Open in IMG/M
Scaffold IDPR_CR_10_Liq_1_inCRDRAFT_1001570 Open in IMG/M
Source Dataset NameMarine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)12632
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (89.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location NameCabo Rojo, Puerto Rico
CoordinatesLat. (o)17.951083Long. (o)-67.193167Alt. (m)Depth (m).05
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039532Metagenome / Metatranscriptome163Y
F040583Metagenome / Metatranscriptome161Y
F054790Metagenome / Metatranscriptome139Y
F074540Metagenome119N
F096774Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
PR_CR_10_Liq_1_inCRDRAFT_100157011F039532AGGAGMSEPYWKYLPEGTFTEEELWEAIAEARGVDVSEIADGDLVEYL*
PR_CR_10_Liq_1_inCRDRAFT_100157012F096774GGAGGMRTIKELSDYEFIAMNNIKRAALALTDGDYNKVEECMGEVLMCMYEVNK*
PR_CR_10_Liq_1_inCRDRAFT_100157015F074540AGGAMLTMTTDRDTVTIHGLPMGEYIEWVKKTHYAYCYNGGERIVDMFSFAWEKNNPNMADFLGAAVNFIDYYFEEKEYAN*
PR_CR_10_Liq_1_inCRDRAFT_10015705F040583AGGAGMFVYLVTTLDGFVARVTTDGDPTDHPAFWGRVANVETLGEADLHAV*
PR_CR_10_Liq_1_inCRDRAFT_10015708F054790AGGMTLNEAWASVYAALPDNAFDYVGKPFYNDDDGSIQLWDGSKMVTYYSAPF*
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