Scaffold P_1C_Liq_1_UnCtyDRAFT_1035718

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold P_1C_Liq_1_UnCtyDRAFT_1035718

Scaffold P_1C_Liq_1_UnCtyDRAFT_1035718

Overview

Basic Information
Taxon OID	3300000386 Open in IMG/M
Scaffold ID	P_1C_Liq_1_UnCtyDRAFT_1035718 Open in IMG/M
Source Dataset Name	Marine microbial community from Union City, CA, USA - Pond 1C Liquid 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	559
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Salt Pond → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location Name	Eden Landing Ponds, San Francisco, CA, USA
Coordinates	Lat. (^o)	37.569083	Long. (^o)	-122.103267	Alt. (m)		Depth (m)	.67
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089940	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
P_1C_Liq_1_UnCtyDRAFT_10357182	F089940	AGGAG	MKYIAAFLIVLGLGIIAGSETHDWMPMFMAQIGLGVATTFFGYLFATQVDE*

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