NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BB_Man_B_Liq_inBBDRAFT_1005774

Scaffold BB_Man_B_Liq_inBBDRAFT_1005774


Overview

Basic Information
Taxon OID3300000401 Open in IMG/M
Scaffold IDBB_Man_B_Liq_inBBDRAFT_1005774 Open in IMG/M
Source Dataset NameMarine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2025
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location NameBioluminescent Bay, La Paraguera, Puerto Rico
CoordinatesLat. (o)17.966667Long. (o)-67.0Alt. (m)Depth (m).39
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104015Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
BB_Man_B_Liq_inBBDRAFT_10057744F104015GGAMPTVQVYDVKFDVTDEGFNALTPSQVKMLEGDIEGRIFEIDCHPDADIAEFEYLICDEITSETGWLVSEFSYRHVVMETKEK*

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