NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TBL_comb48_EPIDRAFT_1056279

Scaffold TBL_comb48_EPIDRAFT_1056279


Overview

Basic Information
Taxon OID3300000439 Open in IMG/M
Scaffold IDTBL_comb48_EPIDRAFT_1056279 Open in IMG/M
Source Dataset NameTrout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1346
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055458Metagenome / Metatranscriptome138N
F088320Metagenome / Metatranscriptome109N
F100445Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
TBL_comb48_EPIDRAFT_10562791F100445N/AMTPIVNEAQAKLIPLAFDLNNRIWMEGYVLCCSFLENAAQILQIQIMDGQGFETMXEYDVELNTHINQVLNILNKEQSITPDMTVWVMSLLNHMLYLKNIVFNPDPNDLIKFIKPLQIIKLNIKESRVLMEGALTWVDKKMMMQ*
TBL_comb48_EPIDRAFT_10562792F088320AGAAGMSQVXENRRREIEDSKRKLAESIMMINGLLSLLEGHKRMLSERNQADPSNGKISIAKEAVKIMADKIKEVLDLNELRLEENIVTQ*
TBL_comb48_EPIDRAFT_10562793F055458AGAAGMSNSLTNIVNKTMATFIKGSMCEILALISAQQKEMIKELEKFPLSKRILVENEVDEATDKLIELLTELQLTXVIETETEDS*
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