Scaffold Soeholt_1019020

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Soeholt_1019020

Scaffold Soeholt_1019020

Overview

Basic Information
Taxon OID	3300000506 Open in IMG/M
Scaffold ID	Soeholt_1019020 Open in IMG/M
Source Dataset Name	Anaerobic digester microbial communities from Northern Denmark, sample from Soeholt sludge
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Aalborg University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1090
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Source Dataset Sampling Location
Location Name	Soeholt, Denmark
Coordinates	Lat. (^o)	57.363486	Long. (^o)	10.268131	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076221	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Soeholt_10190203	F076221	GGAG	MNDREAVKVLIVNDDGQYLTGTAFEWEFTDERGKARVFDYQADRVGELIDLVRKTQGRVWIAVKLDPREVFEFCDRCGCRMWAFKTYFDGRQFLCRNCREVESGAKPGLPPRGASGEVP*

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