 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000532 Open in IMG/M |
| Scaffold ID | CNAas_1000011 Open in IMG/M |
| Source Dataset Name | Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Beijing Genomics Institute (BGI), Lifesequencing S.L. |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11080 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sierra Nevada National Park, Granada, Spain | |||||||
| Coordinates | Lat. (o) | 36.96213 | Long. (o) | -3.41928 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000719 | Metagenome | 923 | Y |
| F004395 | Metagenome | 440 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| CNAas_10000117 | F000719 | GAGG | MKTIPHKTLGALILAAVLATANVVQASNDDFNSVVKMIEQFYRVKHEGIPFLAKAGMKAAKTAARIKGGTARRIAEAGSVKVAVFENQDFDGDFTKFRTALNQALNATWMPLLQTLSATDEEQTYIYLRDAGQKFNVLVITIAQREATVVQVNVSPRNLALLMKDPEGTGKSITEEATIIDQE* |
| CNAas_10000118 | F004395 | AGGAG | MYRKTLTLLLLLVLVTLTSFAVNAQEVDDTIKIKTRVVFLDALVKDKKTNLPISNLAPDNFQVLDEGKPRDISYFSREGQARKPLALILILDLREDGAGRFLKRTEILKAMEDELAKLPPGDEVAIMAMDMNEDEERLWLTEFTNDRATLAAALARVPAMCVPSNGPPPEINSREAQSDGQPSVVVNTETVQGKNGVVITRTTMSDGTVNVKRVSKDGKVTVEINDTYDMATAVRDAAHKAEQLRPNSQTSIVWVSDGIAPIFFEDRDATEQILIRNNVIFNSLTVELRTLFKFLLPIGKPVAGWLGLSLYGSAKHLAQQSGGEAVKVGRVKDYGAGLQRIIGNLTARYSLGFALAESEMDDGRLHSLEVRVKAQDQKGKNRKLQVSSRQGYYMPKTETGLQD* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |