NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold CNAas_1000019

Scaffold CNAas_1000019


Overview

Basic Information
Taxon OID3300000532 Open in IMG/M
Scaffold IDCNAas_1000019 Open in IMG/M
Source Dataset NameQuercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI), Lifesequencing S.L.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10201
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location
Location NameSierra Nevada National Park, Granada, Spain
CoordinatesLat. (o)36.96213Long. (o)-3.41928Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001123Metagenome / Metatranscriptome770Y
F001576Metagenome / Metatranscriptome669Y

Sequences

Protein IDFamilyRBSSequence
CNAas_10000197F001123AGGAGGVNLAMQNDIINEEPTGQNGNAVNGEGNQIKKAFVEPTISVPVDVLEATTFFQSATSGATN
CNAas_10000198F001576AGGALKRTVFCHSAKCIALALLLCMATFANAFSQKPATPEAETKQAPKTAETKAAKKLPFVLTVKTRPILNISLKAEKAKMSEVAQELSKRLKTPVFLGPERQNELLTIEFNELTLEPALQLLSPSVYVDYEIDTGSAGPPKALGIYFFDTNQGEPPLTAVVNGSSQSMLIEGDTEDGVEPDTEDAKKKTEEQPLRVVYQNNSLTVKAKKQPLALVLLKIGEELGIPVDIQESNPAIVDAEISKLPVEDVVRQLSPHIRLFIRADLTRAEKRALRLTLSERPKAAQQDQ*
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