Scaffold CNAas_1000067

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold CNAas_1000067

Scaffold CNAas_1000067

Overview

Basic Information
Taxon OID	3300000532 Open in IMG/M
Scaffold ID	CNAas_1000067 Open in IMG/M
Source Dataset Name	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI), Lifesequencing S.L.
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7805
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location
Location Name	Sierra Nevada National Park, Granada, Spain
Coordinates	Lat. (^o)	36.96213	Long. (^o)	-3.41928	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002416	Metagenome	561	Y
F066243	Metagenome	127	N
F081922	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
CNAas_10000672	F081922	GAG	MRERGNIWPVVAVAAAALCVLVIIPLIIERQKAGRMATVDAHVSIGDGEIAGDQVSAAKNYRWPNGEVPRTAERLRDVTGVTIAAATFLVEESLHRRMPRDADEILTGIVRRRLIPNVWRTDQPGVLRTPHATIHLRYAPRSLTVELISVPNERVDGPAILIRIPDGENTAVGTRYFESMQLDGIIYPRPFASIADVIAAGWQPRLFKQTQLADADRVRLEQWAEATKRRQPNEE*
CNAas_10000678	F002416	AGGAG	MNYLIQTINAPTLSSSCAVRIGRRLVTIGFGMKAAHGVVAVILSILLGVVSVSAQTPSGQFFNGDSAQLGNSLRSVTFFLAAAMIIAGIIFVAVGIITSGLRESLSTWKFITGAACFAFGGICAAIYAFSQGETVPLDNSF*
CNAas_10000679	F066243	GGAG	MRARPIRPNIYLPVVRFGVADSDWFSVLLISCIAYLAPVPFGITLLYVPLQMWTWLLATAGAIAFFNYIRIGRKPYWLQH

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