Scaffold CNAas_1000124

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold CNAas_1000124

Scaffold CNAas_1000124

Overview

Basic Information
Taxon OID	3300000532 Open in IMG/M
Scaffold ID	CNAas_1000124 Open in IMG/M
Source Dataset Name	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI), Lifesequencing S.L.
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6420
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location
Location Name	Sierra Nevada National Park, Granada, Spain
Coordinates	Lat. (^o)	36.96213	Long. (^o)	-3.41928	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001761	Metagenome / Metatranscriptome	640	Y

Sequences

Protein ID	Family	RBS	Sequence
CNAas_10001243	F001761	GAGG	MKFIEFSHPEGGRMVVHIDHITAATFRPGHADVKSRLGLDLDHRQNEVVLFGDEAERIWQVLQEQNG*

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