NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold CNAas_1012001

Scaffold CNAas_1012001


Overview

Basic Information
Taxon OID3300000532 Open in IMG/M
Scaffold IDCNAas_1012001 Open in IMG/M
Source Dataset NameQuercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI), Lifesequencing S.L.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)590
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location
Location NameSierra Nevada National Park, Granada, Spain
CoordinatesLat. (o)36.96213Long. (o)-3.41928Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068238Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
CNAas_10120011F068238N/ALEFNAREQNKGTVAGEMTFSDPTVIPVGDPDAGNSGTPGALVRAKFDCLKITGNRAVMSGEIFDSNILNAIGLRVLLVVEDNGEGINSPATDKLTWGIYQLAGGTWVPKDAERDDDNGAGLSWLATDFERPDDLGIPSNPGKVVGCQSFSLSAYSFVDIAHGGGNVQVQP*
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