NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold CNXas_1011493

Scaffold CNXas_1011493


Overview

Basic Information
Taxon OID3300000545 Open in IMG/M
Scaffold IDCNXas_1011493 Open in IMG/M
Source Dataset NameQuercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI), Lifesequencing S.L.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)628
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location
Location NameSierra Nevada National Park, Granada, Spain
CoordinatesLat. (o)36.965667Long. (o)-3.429194Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092274Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
CNXas_10114931F092274N/AGDLLFARTWKSGEFVANFGYKQTGNPERGLRIQMVDSSQTDPGKFLIGDPVSIPLDLSNELRFSAGYSVPIFHWYKSYWWLIAEFNHTHFVGSHTSTERIIHPAEVSAGIQSNFPWYRNVSVGVMWQLLLNNGGKGLDRSTAFKTADGRGDINFGELMNDPQLTSDVETFLQSRGATFSEASSKVFSTNNPAFDAWRNITVAPAKIQS
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