NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LJNas_1004760

Scaffold LJNas_1004760


Overview

Basic Information
Taxon OID3300000546 Open in IMG/M
Scaffold IDLJNas_1004760 Open in IMG/M
Source Dataset NameQuercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI), Lifesequencing S.L.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1497
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location
Location NameSierra Nevada National Park, Granada, Spain
CoordinatesLat. (o)36.96971Long. (o)-3.46027Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003851Metagenome / Metatranscriptome465Y
F026325Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
LJNas_10047602F003851AGGMPSGHKFHGQLDLKRETSMKHRKLAVAGCRTIDEDAKRVLRALEEAAHGRTNANDPLTEQLKQCPEAFKVGEILGKAFDSLKYAQDGGELGDRYLPPAGVIIPPLV*
LJNas_10047603F026325GGAGGMMTDPASAIKREVHQLIDLQIQTLRQPSSLNTSDLLDYRVRSNKLTVLYQELDQIRRASFKGQLRRAS*

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