NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold F24TB_10077700

Scaffold F24TB_10077700


Overview

Basic Information
Taxon OID3300000550 Open in IMG/M
Scaffold IDF24TB_10077700 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1817
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013046Metagenome / Metatranscriptome275Y
F029190Metagenome / Metatranscriptome189Y
F072202Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
F24TB_100777002F013046AGGAGGLRLTVQGSLVKGDDVEESQLRISSATAADDECVEFWPAGALAKGQFSCTACGNRVTVHQVLPRCTVCGERLWERAEWSPFARADTPR*
F24TB_100777003F072202N/AVRIPVALFEIGTIVSYQGRLYVVLGVTPMSVRPAVLELEDTENGSIRRVRVDDSELVVGVTKRPPANDA*
F24TB_100777004F029190GGAVQLLSHLADADIRRYVTGTVDPETERHVRVCVCCALRLADAAMQAYWWERRGPLGRLVRLSNTQAVDELLTEIAREQRRDAA*
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