NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold F24TB_10679875

Scaffold F24TB_10679875


Overview

Basic Information
Taxon OID3300000550 Open in IMG/M
Scaffold IDF24TB_10679875 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2985
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067073Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
F24TB_106798754F067073GGAGMIRCLEDKTLFLLSEGEASEEQRSHLQSCQACTERYREIERDLRLITHTLQQEPAQFRFAAPRAPIFLRSLPIAAGILLAIALMWGESRLWRPDSSSEQTLSGDLSHFLEQVSEAIFDRGSIREVDTASSEADLASVQVALGENCSAECRELFINSLSTDTKSKAKTEDRPVVATKRRPLDPAMQRMVSDRAR*
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