NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TBL_comb47_HYPODRAFT_10028327

Scaffold TBL_comb47_HYPODRAFT_10028327


Overview

Basic Information
Taxon OID3300000553 Open in IMG/M
Scaffold IDTBL_comb47_HYPODRAFT_10028327 Open in IMG/M
Source Dataset NameTrout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4065
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002539Metagenome550Y
F017967Metagenome237Y
F028086Metagenome192Y
F086581Metagenome110N

Sequences

Protein IDFamilyRBSSequence
TBL_comb47_HYPODRAFT_1002832713F086581N/AMSFDFDPVKYGVLWQKVEGYESKLNDISKKQDKMESQIEELVALANKSRGGFWMGMAIVSAISGLISFFAGLWHGK*
TBL_comb47_HYPODRAFT_100283272F017967GGAMGIKYYVKAAVSEFADKDGQPKKRYQTIGIVTETKKGDLMIKIEMLPMLSMKEGAVWGYLNVPEEKEAGAGKNFSSGAGSKDLATLEDDPPF*
TBL_comb47_HYPODRAFT_100283274F002539AGGAGGMNNEHIWTAAGTDITIRWRMNGWTPPSEIQGYRDKWRYYQNLPLRQLDDAAKEQYEQVLRKAKVMRIK*
TBL_comb47_HYPODRAFT_100283276F028086GGAMTEEKIPFGGNMKVPSDDCEEAFFALYPDFFYEGSTALNLWTQAWFNALDWVEDNKKLIQLL*
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