NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold F14TC_100390560

Scaffold F14TC_100390560


Overview

Basic Information
Taxon OID3300000559 Open in IMG/M
Scaffold IDF14TC_100390560 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1955
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027614Metagenome194Y
F046571Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
F14TC_1003905602F027614AGGAGGVHRRALIALLGIVFFFTLSSRLDARGFQERAKGAPDMVALLEKSGYSYSKVREGVWEIPGTGKNLKEFGIRLALADDVLLVMVRLADRKDVKLQPALMTKLLELNHKFDWIKLALSEDMLYLRMDTHVRLVDGQELKYLVEQIANATDETYPQIKQFVTGGR*
F14TC_1003905603F046571GAGGMTLYRWDSVERRFTPTSVQRPIKPGAGARRLRVEKGQRVRAEVATGDLLIQIIEGAWRMQIANSQLTVRHDEAIIIPSGFSHSAEAIEDSFAVQLEDNQEHQLHDSRWAV*
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