Scaffold F14TC_103217513

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold F14TC_103217513

Scaffold F14TC_103217513

Overview

Basic Information
Taxon OID	3300000559 Open in IMG/M
Scaffold ID	F14TC_103217513 Open in IMG/M
Source Dataset Name	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1134
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location Name	Kanza Prairie, Kansas, USA
Coordinates	Lat. (^o)	39.100992	Long. (^o)	-96.608258	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027608	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
F14TC_1032175134	F027608	AGCAG	LLLAALVACGGLLACDGNPMGPIEGPLATGRWTGDGACLAVTDTGCTLTVGCGHGQFPQPMIRADGTFDVDGTYRVEVGVSIGPAPPAHFSGVVTGSRLVLHVAPSGSLSAASYLMTPTTAGTCLTLCV*

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