Scaffold F21B_10198526

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold F21B_10198526

Scaffold F21B_10198526

Overview

Basic Information
Taxon OID	3300000561 Open in IMG/M
Scaffold ID	F21B_10198526 Open in IMG/M
Source Dataset Name	Amended soil microbial communities from Kansas Great Prairies, USA - acetate DNA F2.1B clc assemly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2093
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location Name	Kanza Prairie, Kansas, USA
Coordinates	Lat. (^o)	39.100992	Long. (^o)	-96.608258	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040189	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
F21B_101985262	F040189	GAG	MAGPPLVYTPPNYTTQNVLYGVGILFTAIPGTTVPSDQNLGVASAWTGLGWAYVGATEAGLTVTFNPSTQDLNIEEQPTPVAVIVNTATLQVTCSLSEETLTNVNMAWGNGGSIAVTPAGAGQPGKSVLTLSTNFASMACAVIGRNQQGYARVLSIPQVMAAGQVQTAYRRAAQQRLYPLTLNATCPFNQISWTDLTAVATS*

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