NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI12270J11330_10000155

Scaffold JGI12270J11330_10000155


Overview

Basic Information
Taxon OID3300000567 Open in IMG/M
Scaffold IDJGI12270J11330_10000155 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50704
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (72.41%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F005283Metagenome / Metatranscriptome406Y
F059669Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
JGI12270J11330_1000015545F005283GAGMQTLERLVAAGFRPIAIPPYESALCVHRGECAAVLAPVENGGLRLLAPATLMVDGNLSVRLKRAAGDVFVWKKKEVAATAERLKELEAFRAELVGMLEMTGRA*
JGI12270J11330_1000015550F059669GGAGGVNPYYTQPPWEFLLTASRNTLQSYELSRLAHAANLRKELGALLDQYLEENTAAMLARWLMDQRERTVLAEETAPAPAPPENKGRRASDNFLGERIVPPRASREQA*
JGI12270J11330_1000015553F000188GGAGGMSVKPEMAFDVCWEVYRGAREVLEAKRGITALTWEVDAKYAWRPDMRPKLKDWVADFALAGQAALEGPQQASRMVLFRLYYLGLTPYERARHFLGLSERSWVNWSEEIRRRCGEELLRRDLFPPRKYFNGAE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.