Scaffold JGI12270J11330

Basic Information
Taxon OID	3300000567 Open in IMG/M
Scaffold ID	JGI12270J11330_10001159 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000567 Open in IMG/M

Scaffold ID

JGI12270J11330_10001159 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Weissenstadt, Germany - SII-2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19826
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

19826

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (62.50%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.13

Long. (^o)

11.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F054329	Metagenome / Metatranscriptome	140	Y
F082028	Metagenome / Metatranscriptome	113	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_1000115914	F054329	AGGAG	MKRDSAFLMLLAVAFMVVAIAYPVQAQQPTPSASQPAQDVPEVNYHLTVMMPQYRFVDTTGYGGRVGEYDSLQQSVGGDLSFEYAAIPLRMTLKSTASVVSQDDYDIKSRLTFGKWLDFTLADRSFIRHLDDNSYFGAAVISPDIIRIDTVSPDSLLGIRRRMNNASVKVQLPKVPVKLFMKGGWMAREGTSQMQYFDMGGDGKVDNTGCANCHSASQLRVINQTTRNIAGGAEVTLGKILKLVYQHEYRSFNDRRQNPLDIYGTAGTIPTSEDIPYTPAGLYVHSVLPRHSTQADSLQMSMAVSHHITLNGDVSYGRTTNLFTDHPQNNFNADATLVWNPISRLRVVADFHQQNLVNDFVSSYSLSDPTVFHIFGNPSLHRHWEGLKWAYRLSKQFDLESYYTRMNITRSDAAYWPQDSSPHNTDPLFVVPASFSNVVGTALHFHSAQFWNARAGYEWTGTHDPGYVTDPRTNQRVFGDVTITPVHWFSFGNDVSMVLQRSFPVVQRSNHLYSDSSFVTIKPVPQWSIGGGYTYLQDNLRTDMQFGNDSAVAIYSQTLVPYKQLSQTYSIRSSYELKKRLGLNVSYAHSAAHSGFRPDLNPADYPAFPWTTAQGGDPQFPAHLAGALALAAGTISQVDVPQTLIGSTANYHFRSGFDTGFHFNYGSYTDFIRPDLNGKLQTYTAFLGRVW*
JGI12270J11330_1000115923	F082028	GGAG	MRSTFYFSAWTDSGCLLGCSHEHQTVTSATACISCAGGYVIAVENGVLRSLTDAEELEFQHAMYGGTVESAKPITPEGVLTILLTIRIRLADRGPG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12270J11330_10001159

Overview

Ecosystem & Geography

Associated Families

Sequences