NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12270J11330_10006162

Scaffold JGI12270J11330_10006162


Overview

Basic Information
Taxon OID3300000567 Open in IMG/M
Scaffold IDJGI12270J11330_10006162 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8367
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000552Metagenome / Metatranscriptome1033Y
F014363Metagenome / Metatranscriptome263Y
F062060Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
JGI12270J11330_100061625F000552GAGGMEAMRRKMVWVKKQDFQGWACSECAWAFNPIGPLVAGSIEEMKTHYEQQRDEEFKSHLCAEHPRATKNPL*
JGI12270J11330_100061626F062060GAGGVNPAFDILKKIGAVNFEWVEVVRDLQTAEARIQELQERSPGEYVVYSQRTQEIVVRFNSPIEGASET*
JGI12270J11330_100061628F014363GGAGGMSALEVHPEIHARELREHPAFSTCHECHRSFRAKSEDQLCLELCDSCFDTMRQPCEPVVRVHVKARPCRPISR*
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