Scaffold JGI12270J11330

Basic Information
Taxon OID	3300000567 Open in IMG/M
Scaffold ID	JGI12270J11330_10029081 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000567 Open in IMG/M

Scaffold ID

JGI12270J11330_10029081 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Weissenstadt, Germany - SII-2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3267
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3267

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.13

Long. (^o)

11.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035367	Metagenome	172	Y
F038201	Metagenome / Metatranscriptome	166	N
F045645	Metagenome	152	N
F063278	Metagenome	129	N
F063304	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_100290811	F038201	GGCGG	MDVFTRNVQYMTSQVAGEHAARAFQMLQATFPGLRNFDQLRAFARLYVSTGLKPLQFRPLPSEVDPQRLKGELALRFHNGMIVLAPDERIVCRGPEAYGPFDPVRAARFSRQLSAESPTNDDKGHTLDPEAC
JGI12270J11330_100290812	F045645	AGG	MGQDLHECGTEDLDMKLQETMLTVLKSVAGVYAVRPIIRGKALALRQGRDGHELAQDEGQAVRVVAVSDVKPSLLSFAAINGIPVKNYTDMAVPKPKAPSAPKPAEVPELVM*
JGI12270J11330_100290813	F063278	GGCGG	LRRMHRFDSQTHNAMKERYLIIGFEPLTRRISLDSERAESATDAMKAVAGMRKAADVLLAWTPGQMRLMADLLAAMTPQQIAFNRRTAELEERAFRASQMAPPPVRTAGPQHQPFLVISYNPVTEAVHLDTELSDSPDAALRSVAGIRGRAHVILAFTPEQLREMAANLEGLTAEQMARNRTAAEQEEKTFNAELAARQ*
JGI12270J11330_100290814	F063304	N/A	MRLNNSTPDRDVSPHIYNLLDQRLAQQGAPLHQLIRTYAAAVPAQPASPEELLNQLTAVLGKWAADPAQRVKPETALAEEHLRLLDDINKIQGPEGASRLEATLVRVVANQFARNMGSALRIQDESKLICLSDVKPGNAYSAFAQRTALIGIQPHEWVKRWVESQRDLFRNKPSDAGYLRMAQRLSGARPLEPGKGDAFQRALATFLDGIAASTSQSHAVVVQSSLLETFARAIRHQARDLGLDRPAVPPPAMAIS*
JGI12270J11330_100290816	F035367	GGA	VLNAVLCGFFGLGIAVLHFLWLEYATVRWPKVRYTDDYQTSFALACATAVFVLTTLRQIKTRLESKSLRPGEIGFILIFAAIVMVGLTPVPGSNFPQYLYEMNYPGKKDTSKEEPKSEEEAKPLKLKRDYP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12270J11330_10029081

Overview

Ecosystem & Geography

Associated Families

Sequences