NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_10616733

Scaffold Draft_10616733


Overview

Basic Information
Taxon OID3300000568 Open in IMG/M
Scaffold IDDraft_10616733 Open in IMG/M
Source Dataset NameTailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC:
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31782
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (75.61%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028848Metagenome / Metatranscriptome190N
F029140Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Draft_1061673320F029140AGGAGGMKDASKEILRFWKTQWEAYMKSMMAMQEQGETMLEMIQKSGVLQEGSLNMVRDWAKKYKSIQKSYLEAVEEHFEKLDEIIGGTP*
Draft_106167339F028848AGGAGGMNSGGSLAHNTSDLFTKLSEGHLGLLNRRQQIYKAATESFFGVVRESFEMKVPEESLKRLQGNMLDLCRLPLETLGDHARLDAYTGELKKLVAAMPVAISGNGFSEELKQYGKTSWENGSKAHSACMSWMLGLLHSQKLTSDRKEAEEAMKTCLETTESFLKESVACWVQQVEAGCGLLKKGLLKEGVTTAPVQ*
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