Scaffold JGI1358J11329_10165546

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI1358J11329_10165546

Scaffold JGI1358J11329_10165546

Overview

Basic Information
Taxon OID	3300000571 Open in IMG/M
Scaffold ID	JGI1358J11329_10165546 Open in IMG/M
Source Dataset Name	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	640
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Magnaporthales → Pyriculariaceae → Pyricularia → Pyricularia oryzae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location Name	S. Glens Falls, New York, USA
Coordinates	Lat. (^o)	43.292222	Long. (^o)	-73.604444	Alt. (m)		Depth (m)	5.4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011693	Metagenome / Metatranscriptome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI1358J11329_101655461	F011693	N/A	DHWATLLPVERDGRVLQHVFEDCAHWWALARHCLSALDAIHELHLVHLDLKADNVCIPVAPADFAADLPGGVLYPQFGQLALIDFAFSLVSGDHLSTAFPIGRQGDYDYQSPRLLQALEAGRRGDLLPTRQLDWRCDFFSLAAMLARYLPRPDSGVAPGWQGWRHAQAQALVQALSEAHDHGSPADRPHRELIATTTLALADPALEASLARGW

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