NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI1357J11328_10012138

Scaffold JGI1357J11328_10012138


Overview

Basic Information
Taxon OID3300000574 Open in IMG/M
Scaffold IDJGI1357J11328_10012138 Open in IMG/M
Source Dataset NameSubsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4766
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location NameS. Glens Falls, New York, USA
CoordinatesLat. (o)43.292222Long. (o)-73.604444Alt. (m)Depth (m)5.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051803Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
JGI1357J11328_100121384F051803N/AMLFLVILVVPAISAQEVAETIKVRTRVVFMDALVKDNRTGINISDLSADNFEVLDDGQPRKISYFTREGQARKPLALVLILDLRDDGAGRFLKRDEVRKAMLDELAKLPEGNEVAILAVNMNSVDDKTAAIRNGKALWLTEFTRDRAQLDAALARVPALIAPAPKPSKTDPPKSENKPAQESSGSVTIQSDPDESKKADQAKPKQDDDVLATETIQGKNGAVITRTTKKDGSVDVKRVFDSGIVKVEFNNIYDMAAATRDATHMVEKKRPRSQAAIVWLSDGIAPIFYEDRDAAERILIGSNTIFNSLTVDLRTLFKFLLPVMKPAAGWMGMSLYGSAKHLAQQSGGEAVHVGRVRDYGAGLAKIIGNLTARYSLGFALREDEKDDGRLHQLDLRVKALDAKGKPRKLEVSARKGYYMPKSNAEQTSAAVK*
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