Scaffold SL_4KL_010_BRINEDRAFT_10065888

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SL_4KL_010_BRINEDRAFT_10065888

Scaffold SL_4KL_010_BRINEDRAFT_10065888

Overview

Basic Information
Taxon OID	3300000575 Open in IMG/M
Scaffold ID	SL_4KL_010_BRINEDRAFT_10065888 Open in IMG/M
Source Dataset Name	Alkaline brine water microbial communities from Picturesque Lake, Kulunda Steppe, Russia - 4KL_010_BRINE
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1684
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Brine Water → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location
Location Name	Russia: Kulunda Steppe, Picturesque Lake
Coordinates	Lat. (^o)	51.43	Long. (^o)	79.52	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F079661	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
SL_4KL_010_BRINEDRAFT_100658885	F079661	GGTGG	MSDTTIQIPESVRDDLRDERLPHESNYGDTIKRLLGDSTGGQLWTEQEITDVVDRRIELYQR*

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