NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold AF_2010_repII_A1DRAFT_10000159

Scaffold AF_2010_repII_A1DRAFT_10000159


Overview

Basic Information
Taxon OID3300000597 Open in IMG/M
Scaffold IDAF_2010_repII_A1DRAFT_10000159 Open in IMG/M
Source Dataset NameForest soil microbial communities from Amazon forest - 2010 replicate II A1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)12673
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location NameAmazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
CoordinatesLat. (o)-10.171667Long. (o)-62.7875Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001252Metagenome737Y
F004536Metagenome / Metatranscriptome434Y
F037890Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
AF_2010_repII_A1DRAFT_1000015911F037890AGGAGMKVLTKQIARLGDEAFCVVFEDDLERCWPSNKMSPPKRKREIEDFAESQRWTAAILEGAFGTRAIFRRI*
AF_2010_repII_A1DRAFT_1000015916F001252N/AMSTKLLTALILVALSFAALASANDAREQAARIIAQIQRADYEGDRPAMQRGYDELKPFVDDEKLASRIRYWRGFAQWRRAINGFNDAVDPKELEQNLNTAVKEFRIAMEKDPAFVDAKVGTISCLGFLAFMTRKDQPRAKELVRQILPLVKEADEMASDNPRLIWVHGPILWNSPPERGGGQDKAIQNYQRGLEACSKVKTSDDPLEPSWGKPELMMSLAYCYLNASSADINAAERYARNALEIVPYWHYVRDILLPQIVAAKAKLQ*
AF_2010_repII_A1DRAFT_100001594F004536GAGMAARIEIKELGDPAHQKKITDAVGALNGVIETKIAKGALHVSYDPLATTEKKIEQAIRSTGTTIKNAVTDTEGAHPDLPTPNVQQSAAQNAQQSEDV*
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Institute for Fundamental Biomedical Research
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