Basic Information | |
---|---|
Taxon OID | 3300000750 Open in IMG/M |
Scaffold ID | JGI12272J11983_1040922 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate A) D5A (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 500 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Moab, Utah | |||||||
Coordinates | Lat. (o) | 38.714694 | Long. (o) | -109.692944 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009290 | Metagenome / Metatranscriptome | 320 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI12272J11983_10409221 | F009290 | N/A | VEATAKNIDNTARTAREMAEAQRDSFEALAENFASAQRRSMGLAEGGLEFVKLQEDNARAAQEFFAQGVRLLQLQGRNAEFVQSWTGDAVEVMREQSEHNARTAEAFARAIGRQQESFRTLTRGWVGAYTEFFSPFAYARQGMRAFQDATRQGLEATEQ |
⦗Top⦘ |