NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11851J11668_1002034

Scaffold JGI11851J11668_1002034


Overview

Basic Information
Taxon OID3300000754 Open in IMG/M
Scaffold IDJGI11851J11668_1002034 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)821
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Asinibacterium → unclassified Asinibacterium → Asinibacterium sp. OR43(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001252Metagenome737Y

Sequences

Protein IDFamilyRBSSequence
JGI11851J11668_10020341F001252N/ASRVGISAAACWSTGVPTMIKMYSGKNRAVAAALVAALFFAPLCMTQATPANEAREQVARIIAQIQRGDYEGDRAAMQRGYDDLKPFTEEKEIASRVRYWRGFAQWRRAINGFNDSVDPKELEQNLKTALEEFKIANEQDPKFVDAKVGLISCWGYLAFMNRKDRVRAQEFVSQVMPLVKEADEMAPDNPRLIWVHGPIFWNTPPEHGGGQDKAIENYHRGLEVCSKIKASDDPLEPSWGKPELMMTLAYCYLNANKPDVDAAERYARQAVEIV
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