Basic Information | |
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Taxon OID | 3300000756 Open in IMG/M |
Scaffold ID | JGI12421J11937_10000041 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 40354 |
Total Scaffold Genes | 75 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 64 (85.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F016801 | Metagenome / Metatranscriptome | 244 | Y |
F025983 | Metagenome / Metatranscriptome | 199 | Y |
F079981 | Metagenome / Metatranscriptome | 115 | Y |
F103149 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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JGI12421J11937_1000004112 | F079981 | GGAGG | LATALIALEGVLKTETGDPIPEGVKLYRILSEHYRVVIASDLTYDQTEHWLRANLIIGYGDIYDDRYFFEGQDLRSRQLSIARSKGRVELFVDPDADRCAEALSLGVPVIMFASPRFVRTSRKVKPWDDLKSEVEKQKLALLDAHLGSRVNRYE* |
JGI12421J11937_1000004119 | F103149 | AGGAG | MQFANLNIKTKEIRKLVDALEDAGLKVSITNGKHHVKVVNPKTKQTVFFGPQSLGDRRASKNILRDLKKVGFHGNINS* |
JGI12421J11937_100000415 | F025983 | GGAG | MAVNESGSLNSSLSEGSTDGKYRKVRPNTTVASGTGDDITLANRRGLHPFQNYGFIDQETPNKVEPGKMGASSKPRSSMPVADIENNQMGASY* |
JGI12421J11937_1000004153 | F016801 | GAGG | MTTLAAIQGDGWAVIGCDSRASDDSGRYMDLATHKIVNNNGILIAVSGASRGGNIAQFGWKAPKPKLNEDLDKWMTTIFIPALRKAFQDAGYEGKDDGAAAEHDSSLIIAVRGVIYPIFEDYSWDREARNVYYSGSGGDIALGALEAMNFSKITSAQVAEKTLTKAIGIAIKHDIYSGGEIHTYVQEA* |
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