Basic Information | |
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Taxon OID | 3300000756 Open in IMG/M |
Scaffold ID | JGI12421J11937_10000069 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 33454 |
Total Scaffold Genes | 37 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (81.08%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001106 | Metagenome / Metatranscriptome | 776 | Y |
F009961 | Metagenome / Metatranscriptome | 310 | Y |
F012456 | Metagenome / Metatranscriptome | 280 | Y |
F030095 | Metagenome / Metatranscriptome | 186 | N |
F070122 | Metagenome | 123 | N |
F099281 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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JGI12421J11937_1000006912 | F099281 | GGA | MAIVNKNFKVKNGLNVAGPATFDAAVNVDNLVLNSTPLAFDSSTGRLKIQINGAWKEIALLTDAAEDTSALTFMDIGLAMDYNGQPIYTVYANGVNTTATKFADGGDYSTDTYSMTFDSGTID* |
JGI12421J11937_100000693 | F030095 | AGG | VAAQKNFEVDQNTTFTFEVQYLDEDQTPIQLNFHAAKLQVRDTQGGKKLAFTLTEQDGIQISPTEGKLKISISADRTNKMFYPKSAYDLVIVDPSVNKTRLLEGYMTLNRSVTV* |
JGI12421J11937_1000006932 | F001106 | AGGAG | MSFDTLKVAELKVIATDFAVDTEGLKNKKDIIAALAEEGVTWSVYQSTVEAIERDTEEIEILPKFDPKAQPEDTLLVRMTRDNHRYDIHGYTFTKDHPFIAMSEDDAQKIFDTEEGFRLATPKEVQDFYN* |
JGI12421J11937_1000006934 | F070122 | N/A | MSLATSLMPMKLDIYLQLDTQDENTGAIKKEWIFTRSVPCSAKGMISNSGTGRGGDKQTFNNKYMNEQMLEIRTPDQITYREKVTNVRDMNGNVVWKEINYPNNTPTVFEVISSTPITDPFGNVLAYNSIAKRSENQEIGF* |
JGI12421J11937_1000006935 | F012456 | GGAG | LDSSVALIQTASGLERLMAGSVPGVIKDSTVAQISAFLYYEAAVLSKLTTNESFKNLFKTTIFNQIEKDFGLYMDSQARTKPRSLHHVYEWNKTGIPSSRLFNLYAIEMEGLSFRINYNFKLSKSSVPTKNKKQKKKYVFGNKADVMEAGMPIVIRPRSAERLVFEMDGETVFMPKGTSVTVRKPGGAQASHQFSLSYGRFFGGQLVNSSIKSSGLQRIFNLKMAKALDVPMNIKKVQYSFTPGKIRIQADASLDAAFGGSL* |
JGI12421J11937_1000006936 | F009961 | GGAGG | MTVDYKIDAMFELRKFLWKELKDSFIFDAYDYYSDNLGKEIIPIIPVQQSPEMDQFLNGKKHIIYDKIGMSYEENWLICCEKILFTIYSTDVTEIYEIRNLMTDLFRRMDESAVDVNDQNRPSKLKFHSIHIVETSPIDPSLELKGFMSTDVILEVKYSRTTDKSGRFN* |
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