Scaffold JGI12421J11937_10000297

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12421J11937_10000297

Scaffold JGI12421J11937_10000297

Overview

Basic Information
Taxon OID	3300000756 Open in IMG/M
Scaffold ID	JGI12421J11937_10000297 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18962
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (38.10%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020538	Metagenome / Metatranscriptome	223	Y
F074413	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000029714	F074413	N/A	MTTPRFFNCYQDQDPGLSPKSTRLVFKAVIFHGSGHDEIQRIRVGTDDTKQWDVLWLNTGWGDGTIPLVWVTKGSLRGRALWAGLVHAWFAGAKASQDATEPPYDEFTPTKNGLLDEAAVQAIAEQVWPEELDEDFAD*
JGI12421J11937_1000029719	F020538	N/A	MIPIPTGCARFLCYGWIITGVIFVLGLNKNGEDLSGAGLLAIGLGVLGLYVTRPRKD*

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