NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12421J11937_10000936

Scaffold JGI12421J11937_10000936


Overview

Basic Information
Taxon OID3300000756 Open in IMG/M
Scaffold IDJGI12421J11937_10000936 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11685
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015601Metagenome / Metatranscriptome253Y
F038245Metagenome / Metatranscriptome166Y
F045760Metagenome / Metatranscriptome152N
F078719Metagenome / Metatranscriptome116Y
F080054Metagenome / Metatranscriptome115N
F099303Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
JGI12421J11937_100009362F099303AGGMNFIEFTYTKADGTKSKRAVLPLVGPTTFVEGIDVSQMPEDEFVVFCRDFSAMKSAQHEQTMAMLEQFDLKHNYRRFIPEKMSDITTDYV*
JGI12421J11937_1000093626F015601GGAGMAGYTKEFLVDAFMSRYLGCDHLSIEKLERLEIMANDLYDRVGRDQFRVYACLDAEAIREYKTKVTA*
JGI12421J11937_100009363F078719AGGMEIIEIYLLFALTTGITSCYVFLSPAIALARESGIRNSFTDSTLLSYLIYITITTITAPFSVLPIFIPSFAERFKTGLEKSVMENQI*
JGI12421J11937_1000093631F080054GGAGMSTQPNYTAELEALILDVLLPVYEQHCRQRGIASLRSEINPELLKQLRKKKTVPRLFMPKPKDNHA*
JGI12421J11937_100009364F045760GGAGMASSGSKAKQAYAALYKSSTRWATNRKIKLTRVLKQQPNNEQIKDALANIKYRRHTPTTKTVWSHDNIRVAKLFKEFTGRASADLFSSNPKVQSAALAYRPDWDKVKIIEGRVNFSLGARAHDSKGNLVWK*
JGI12421J11937_100009365F038245AGGAMKIYFGNANEDLFSDGLFVVNDNQYYYGVQHGTNPGGLDEVVIFDGCKRKVPLHIEAIPELIAALQEIQKVSEAIKEANRLTERAESRTKGYVYNSWNDEFEVDFDTE*
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