NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12421J11937_10000965

Scaffold JGI12421J11937_10000965


Overview

Basic Information
Taxon OID3300000756 Open in IMG/M
Scaffold IDJGI12421J11937_10000965 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11515
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (67.86%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008814Metagenome / Metatranscriptome327Y
F011394Metagenome / Metatranscriptome291Y
F014140Metagenome / Metatranscriptome265Y
F021988Metagenome / Metatranscriptome216Y
F066776Metagenome / Metatranscriptome126Y
F072349Metagenome / Metatranscriptome121Y
F105192Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
JGI12421J11937_100009651F021988N/AMSNSFKKEDGTGMVPPANAGAPAGAVTSTNTPKRYPRQGVKIDTNKHGIRRETSLIPKPTKKPRHKKP*
JGI12421J11937_1000096514F008814N/AMDNKLTVLEEIIKEIGEELYQKWYNALAIEDRTEEASKAMSANAGETAVWVIQTFMNKFNKAADELKGD*
JGI12421J11937_1000096519F105192N/AMNIPLTEILITLFAAAISGLLTAQIGARRSKKEKAERQVEKAHDQLLLELKDLEIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTLLKLSHLEIHSDEH*
JGI12421J11937_1000096520F072349GAGLKESQEEKIMDKVLCYSCNKSKNELSAKKSVLLPINLLLCKSCADNKLEPRWIVILAGRQYGSDHVKEHIAKKKYVGVDITASELLI*
JGI12421J11937_1000096521F011394GGAMFIDKNKNHFKYGINEWTGEPNKPTFYTKEMALKIRELKKPTSTLEMDIVKYPDFLAIRLYENNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGKNHG*
JGI12421J11937_1000096523F066776GGAMLNLTEQGVEIFIKKFQSSVQKSFWNNYDLVIWKKDHGGYTDTKGMYYNNAWGKAEKISVDKKGIWKLPKKYVRYFK*
JGI12421J11937_1000096526F014140N/AMNKYRIKLDVEVEVEAFNPEDASEYIHDIFNIDDEIKKVNIVKMQQK*
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