Scaffold JGI12421J11937

Basic Information
Taxon OID	3300000756 Open in IMG/M
Scaffold ID	JGI12421J11937_10001810 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000756 Open in IMG/M

Scaffold ID

JGI12421J11937_10001810 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8648
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (26.09%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8648

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (26.09%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F015723	Metagenome / Metatranscriptome	252	Y
F024249	Metagenome	206	N
F025437	Metagenome	201	N
F039112	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000181012	F025437	GAG	MQMRPFEIRQLKVSKEQYFARLGFSDNGGRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFESMQVELNKLNEVVAELSKYKELYITLKRTFDEF*
JGI12421J11937_1000181013	F010908	GAGG	MKQILSPFQKYECFAVDGVDYLVVDYTIVQDKDDNLVEWASEMKFKRLKDHKHFTMPITKIITNHQEGRAKLCKCK*
JGI12421J11937_1000181016	F015723	N/A	MPKIISITPTGMWQDLHKLEIRFDTGDFGTAFAKSQTPPYAVGDEVEYTKNEKGTVKIQRPNPYGASTGSSYTPSAPKGNDERSASIIRQVALKAAVEYACAAKHDVNTILANAETFNAWMTGASAAPASHTEHFANRNDPF*
JGI12421J11937_1000181017	F039112	N/A	MTLSFSSDVYTEMVQVQQAQIQALQNKVAELQARIEVLEQQSILFI*
JGI12421J11937_1000181018	F009600	N/A	MRLSDSRQLTYKIVVGKVPSLNAFYASKHWTARVKAKELASKEVMSQLEKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRKYVHSLKLVHDTTIPKDTAEITFTGLLVTE*
JGI12421J11937_100018105	F024249	N/A	MTFTYNDLKFWLEDADLLPQSYWDALEDYNPDDKNSDEILAKWLGYAHVADFYEYEMDITYVEETYNEDGYTNTVAYPTTSIYGEAPKLADDIYAKWLNWATQVASEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12421J11937_10001810

Overview

Ecosystem & Geography

Associated Families

Sequences