NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12421J11937_10003086

Scaffold JGI12421J11937_10003086


Overview

Basic Information
Taxon OID3300000756 Open in IMG/M
Scaffold IDJGI12421J11937_10003086 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6699
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F006846Metagenome / Metatranscriptome363Y
F014017Metagenome / Metatranscriptome266Y
F020166Metagenome / Metatranscriptome225Y
F028166Metagenome / Metatranscriptome192Y
F045752Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
JGI12421J11937_1000308610F006846AGGAMLIEFVERYLMRPKRLRMAIQAVVRDNDELLRTIKEYEEDDTPTNLTWSEGDRWYGWTFNRSNSRYYFDDIGNESLMGLWEDQWAREADENGRSKSNTSQG*
JGI12421J11937_1000308611F020166N/AMKEPKIMKMDWRSLGYWPVYKDGKLTWEKDPDKNVN*
JGI12421J11937_1000308614F001280GGCGGMCIECGCESVGSESGIIPVIVTDVSRDGEAGLTLSMTSTPEQTRQFINE*
JGI12421J11937_1000308615F028166AGGAGMSDGKDLNGFNELQAGASNSLDLNPTGQAPASAFPATDKSTQDGSGLGNGGK*
JGI12421J11937_1000308617F014017AGGMDKLVEYLDESYRKKIADQIRYLELPPDWKPYEVIRYIVRIIEKNNG*
JGI12421J11937_100030869F045752GAGGMADPNQTPARGSWVCPCSGCSKAVAFERENLVELILLHKAEYLVYRGSSFDAEGNLLWAKDDASAYAEGIDYVVKLIEDRKPKPKKKG*
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