Scaffold JGI12421J11937_10004882

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12421J11937_10004882

Scaffold JGI12421J11937_10004882

Overview

Basic Information
Taxon OID	3300000756 Open in IMG/M
Scaffold ID	JGI12421J11937_10004882 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5340
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004669	Metagenome	428	N
F015209	Metagenome	256	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000488215	F015209	N/A	MNSYRRKALSLWSDLLEEERWHKFESTNCKPSCKGWNGWAPYCECFENSCTFVPKGEIEDMELVIIAKPIDDVLRNIQVIP*
JGI12421J11937_100048828	F004669	GGA	MKLWEIKNFQSSSVKALFVGQTANGQDCIACAWNSSELYVFAYEGIVDTFLWALEMFQSVGQAMAYAKLKNGMEERSYSLPYQVTMEQRTHNQLYRFQLQYLHIFESTLVIHQNLSQDTPENAIKNLISRGDIEAENSRLIDIFRKREVCA*

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