NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12421J11937_10008002

Scaffold JGI12421J11937_10008002


Overview

Basic Information
Taxon OID3300000756 Open in IMG/M
Scaffold IDJGI12421J11937_10008002 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4129
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002643Metagenome / Metatranscriptome540Y
F008751Metagenome / Metatranscriptome328Y
F066770Metagenome126N

Sequences

Protein IDFamilyRBSSequence
JGI12421J11937_100080022F002643N/AMKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKNGYKFTKENIKKLTAQVKELGEKEFEFTTILVVNPQGLEDFNFLEDWTTGITFVKEEEEEL*
JGI12421J11937_100080023F008751GAGGMNATLFIIGQAIIIIAGLIGIYVKISLKLKELEIRVSMVEKQDDQIYKKLDHILDQINKLSIALQNKQDR*
JGI12421J11937_100080026F066770N/AMRYLFILFLFGCGVQAQKIDKDIEFEELMKQVNATNVKSATVLAKATKKEKQLVTNAVATITQMKSEISELKSVNSIVKIDTLYVYIHDTILIKEKKNFWGKTKTDTTN*
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