NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11643J11755_11756343

Scaffold JGI11643J11755_11756343


Overview

Basic Information
Taxon OID3300000787 Open in IMG/M
Scaffold IDJGI11643J11755_11756343 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1729
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007637Metagenome / Metatranscriptome347Y
F014066Metagenome / Metatranscriptome266Y

Sequences

Protein IDFamilyRBSSequence
JGI11643J11755_117563431F007637N/AEEAPAGAGRELTSPQRPRITLVAFFAGKGWESEGVNVAQQRFADHLRKAMLRAIQERKGRWDRVDPDTEIASIGEGIGLSEDQSYELFGXLVDEGFVDPGRAYGSGGAMPGSISRIVGREENMTVIGDELRLTDKGRSEVG*
JGI11643J11755_117563432F014066GAGGMSKELTTEMLDELRTEITSYFEAYYSALRNEIAGHDALYDSIPHYFKGSREVVTSFCRDGVLIVHKPSETGQDSYVFESVLDTWVEDVVAXYTPTLPXGESVXXIDYSPYEDFGXFSLTEPLXXXENGRXYESEWTRMDIASWNNLGMWRDKLQARKLARNDLRPYLEEL*
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