NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11643J11755_11807638

Scaffold JGI11643J11755_11807638


Overview

Basic Information
Taxon OID3300000787 Open in IMG/M
Scaffold IDJGI11643J11755_11807638 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2014
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023898Metagenome208Y
F073993Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
JGI11643J11755_118076383F023898AGGAGMILSFKQIAAAVVLGICAVSTSGVMAQQTPVSAVRVIRYQGDFAMALANMSGTFGVTIGLELDTQRYRTVTVSLDDATVMDIVNAIVQSSKKYQWQQTGGFIDVWPIAGSNPLLETKINSFNVKDLSPSEAFDRLLNLPEVQQNMTALNLKRRAPDVAPEKLSSARFSVNLEGVSLREALNKIAQESHIGIWIFRNYPNGFFSISSLER*
JGI11643J11755_118076384F073993AGGMRTLKIAVLVVLMSFVGHAQERSDADATYALKGPVHTFKVEVATFVSKDGSYVEGPRVAQMEATFNQDGNRTDLLMYDDRGAVVRRIVMKFDGLKMTEALNYDGLGKMWLRIVNVYDEQSRIK
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