NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold AL20A1W_1002459

Scaffold AL20A1W_1002459


Overview

Basic Information
Taxon OID3300000880 Open in IMG/M
Scaffold IDAL20A1W_1002459 Open in IMG/M
Source Dataset NamePermafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10469
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location
Location NameAxel Heiberg Island, Nunavut, Canada
CoordinatesLat. (o)79.26Long. (o)-90.46Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040820Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
AL20A1W_10024591F040820N/AVLLSLKDGSHRASASVGTDPVAVIVSEDGGMAYVADSSPGDVYAVRLPGLSVAWKRHVGGAPFGLLLHAGSLFVSLFSGAAVVELDPADGTQRASHPVPQGPGVLGIAPDGRVMVAGTRGNVDYVDGTSTPAGHGFSVAVVAGEIWTADYERAELVRAGDGHRVGLPLPLFPFWLAPGAAGTLLIAAEGGTEDTDPGGVFSFDGVGTFKTLARPRDPDQVLQSGSTVLVAAHGDHEVLAIAGGLTDHWGVGSSPVAIASDPALNLLVVAVNANE*
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